IL_4V4S_079

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GCUAG*CAAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_079 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.4595

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V4S|1|BA|G|875
4V4S|1|BA|C|876
4V4S|1|BA|U|877
4V4S|1|BA|A|878
4V4S|1|BA|G|879
*
4V4S|1|BA|C|898
4V4S|1|BA|A|899
4V4S|1|BA|A|900
4V4S|1|BA|A|901
4V4S|1|BA|C|902

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L16

Chain BZ

50S ribosomal protein CTC