IL_4V4S_090

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CGUU*AAGUG

Length

9 nucleotides

Bulged bases

4V4S|1|BA|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_090 not in the Motif Atlas

Geometric match to IL_4V88_429

Geometric discrepancy: 0.3445

The information below is about IL_4V88_429

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V4S|1|BA|C|1196
4V4S|1|BA|G|1197
4V4S|1|BA|U|1198
4V4S|1|BA|U|1199
*
4V4S|1|BA|A|1246
4V4S|1|BA|A|1247
4V4S|1|BA|G|1248
4V4S|1|BA|U|1249
4V4S|1|BA|G|1250

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BF

50S ribosomal protein L4

Chain BU

50S ribosomal protein L20