IL_4V4S_104

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V4S|1|BA|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_104 not in the Motif Atlas

Geometric match to IL_5TBW_078

Geometric discrepancy: 0.2793

The information below is about IL_5TBW_078

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4V4S|1|BA|C|1686
4V4S|1|BA|G|1687
4V4S|1|BA|U|1688
4V4S|1|BA|A|1689
4V4S|1|BA|A|1690
4V4S|1|BA|C|1691
*
4V4S|1|BA|G|1696
4V4S|1|BA|G|1697
4V4S|1|BA|A|1698
4V4S|1|BA|G|1699
4V4S|1|BA|A|1700
4V4S|1|BA|A|1701
4V4S|1|BA|G|1702

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2