3D structure

PDB id
4V4S (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the whole ribosomal complex.
Experimental method
X-RAY DIFFRACTION
Resolution
6.76 Å

Loop

Sequence
CGAGG*CCGAG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4S_119 not in the Motif Atlas
Geometric match to IL_5J7L_274
Geometric discrepancy: 0.3812
The information below is about IL_5J7L_274
Detailed Annotation
Triple sheared
Broad Annotation
No text annotation
Motif group
IL_17948.2
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
13

Unit IDs

4V4S|1|BA|C|2350
4V4S|1|BA|G|2351
4V4S|1|BA|A|2352
4V4S|1|BA|G|2353
4V4S|1|BA|G|2354
*
4V4S|1|BA|C|2363
4V4S|1|BA|C|2364
4V4S|1|BA|G|2365
4V4S|1|BA|A|2366
4V4S|1|BA|G|2367

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B0
50S ribosomal protein L27
Chain B8
50S ribosomal protein L35
Chain BS
50S ribosomal protein L18

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