IL_4V4S_133

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

GGC*GUCC

Length

7 nucleotides

Bulged bases

4V4S|1|BA|C|2879

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_133 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.2992

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V4S|1|BA|G|2838
4V4S|1|BA|G|2839
4V4S|1|BA|C|2840
*
4V4S|1|BA|G|2877
4V4S|1|BA|U|2878
4V4S|1|BA|C|2879
4V4S|1|BA|C|2880

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BR

50S ribosomal protein L17