IL_4V4S_180

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

CCGAG*CGGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_180 not in the Motif Atlas

Homologous match to IL_9DFE_095

Geometric discrepancy: 0.2476

The information below is about IL_9DFE_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V4S|1|BA|C|2466
4V4S|1|BA|C|2467
4V4S|1|BA|G|2468
4V4S|1|BA|A|2469
4V4S|1|BA|G|2470
*
4V4S|1|BA|C|2480
4V4S|1|BA|G|2481
4V4S|1|BA|G|2482
4V4S|1|BA|C|2483
4V4S|1|BA|G|2484

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BQ

50S ribosomal protein L16