IL_4V4S_181

3D structure

PDB id

4V4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the whole ribosomal complex.

Experimental method

X-RAY DIFFRACTION

Resolution

6.76 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V4S|1|BA|A|2542

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4S_181 not in the Motif Atlas

Homologous match to IL_9DFE_099

Geometric discrepancy: 0.3307

The information below is about IL_9DFE_099

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02555.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

4V4S|1|BA|U|2522
4V4S|1|BA|G|2523
*
4V4S|1|BA|C|2540
4V4S|1|BA|A|2541
4V4S|1|BA|A|2542
4V4S|1|BA|G|2543

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B9

50S ribosomal protein L36