IL_4V4T_021
3D structure
- PDB id
- 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.46 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 4V4T|1|AA|A|532, 4V4T|1|AA|U|534, 4V4T|1|AA|A|535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4T_021 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.3544
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V4T|1|AA|G|515
4V4T|1|AA|U|516
4V4T|1|AA|G|517
4V4T|1|AA|C|518
4V4T|1|AA|C|519
4V4T|1|AA|A|520
4V4T|1|AA|G|521
*
4V4T|1|AA|C|528
4V4T|1|AA|G|529
4V4T|1|AA|G|530
4V4T|1|AA|U|531
4V4T|1|AA|A|532
4V4T|1|AA|A|533
4V4T|1|AA|U|534
4V4T|1|AA|A|535
4V4T|1|AA|C|536
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal protein S3
- Chain AD
- 30S ribosomal protein S4
- Chain AL
- 30S ribosomal protein S12
- Chain AX
- 5'-D(*AP*UP*GP*UP*UP*CP*UP*AP*GP*UP*AP*CP*AP*AP*UP*AP*AP*U)-3'
Coloring options: