IL_4V4T_057
3D structure
- PDB id
- 4V4T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the whole ribosomal complex with a stop codon in the A-site.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 6.46 Å
Loop
- Sequence
- CGGGAG*CAG
- Length
- 9 nucleotides
- Bulged bases
- 4V4T|1|AA|G|1442, 4V4T|1|AA|G|1443, 4V4T|1|AA|A|1446
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4T_057 not in the Motif Atlas
- Homologous match to IL_4LFB_064
- Geometric discrepancy: 0.2107
- The information below is about IL_4LFB_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34117.1
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
4V4T|1|AA|C|1440
4V4T|1|AA|G|1441
4V4T|1|AA|G|1442
4V4T|1|AA|G|1443
4V4T|1|AA|A|1446
4V4T|1|AA|G|1447
*
4V4T|1|AA|C|1459
4V4T|1|AA|A|1460
4V4T|1|AA|G|1461
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AT
- 30S ribosomal protein S20
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
- Chain BT
- 50S ribosomal protein L19
Coloring options: