IL_4V4V_012

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UAGU*AG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_012 not in the Motif Atlas

Homologous match to IL_4LFB_012

Geometric discrepancy: 0.1869

The information below is about IL_4LFB_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_47074.2

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4V4V|1|AA|U|249
4V4V|1|AA|A|250
4V4V|1|AA|G|251
4V4V|1|AA|U|252
*
4V4V|1|AA|A|274
4V4V|1|AA|G|275

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AQ

30S ribosomal subunit protein S17

Chain B0

Large subunit ribosomal RNA; LSU rRNA