IL_4V4V_016

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

4V4V|1|AA|A|412

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_016 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1723

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V4V|1|AA|U|409
4V4V|1|AA|G|410
4V4V|1|AA|A|411
4V4V|1|AA|A|412
4V4V|1|AA|G|413
4V4V|1|AA|A|414
4V4V|1|AA|A|415
4V4V|1|AA|G|416
*
4V4V|1|AA|U|427
4V4V|1|AA|G|428
4V4V|1|AA|U|429
4V4V|1|AA|A|430
4V4V|1|AA|A|431
4V4V|1|AA|A|432
4V4V|1|AA|G|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal subunit protein S4