IL_4V4V_028

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGUGUAG*CGUAGAGAUC

Length

17 nucleotides

Bulged bases

4V4V|1|AA|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_028 not in the Motif Atlas

Geometric match to IL_8C3A_440

Geometric discrepancy: 0.3448

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

4V4V|1|AA|G|682
4V4V|1|AA|G|683
4V4V|1|AA|U|684
4V4V|1|AA|G|685
4V4V|1|AA|U|686
4V4V|1|AA|A|687
4V4V|1|AA|G|688
*
4V4V|1|AA|C|699
4V4V|1|AA|G|700
4V4V|1|AA|U|701
4V4V|1|AA|A|702
4V4V|1|AA|G|703
4V4V|1|AA|A|704
4V4V|1|AA|G|705
4V4V|1|AA|A|706
4V4V|1|AA|U|707
4V4V|1|AA|C|708

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal subunit protein S11

Chain B0

Large subunit ribosomal RNA; LSU rRNA

Chain BA

50S ribosomal protein L2