3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
UUUGUUGC*GGAACUCAAA
Length
18 nucleotides
Bulged bases
4V4V|1|AA|U|1125
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4V4V|1|AA|U|1121
4V4V|1|AA|U|1122
4V4V|1|AA|U|1123
4V4V|1|AA|G|1124
4V4V|1|AA|U|1125
4V4V|1|AA|U|1126
4V4V|1|AA|G|1127
4V4V|1|AA|C|1128
*
4V4V|1|AA|G|1143
4V4V|1|AA|G|1144
4V4V|1|AA|A|1145
4V4V|1|AA|A|1146
4V4V|1|AA|C|1147
4V4V|1|AA|U|1148
4V4V|1|AA|C|1149
4V4V|1|AA|A|1150
4V4V|1|AA|A|1151
4V4V|1|AA|A|1152

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AI
30S ribosomal subunit protein S9
Chain AJ
30S ribosomal subunit protein S10

Coloring options:

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