IL_4V4V_064

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAACC*GGAGUGAAAAAGAAC

Length

20 nucleotides

Bulged bases

4V4V|1|B0|A|504, 4V4V|1|B0|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_064 not in the Motif Atlas

Geometric match to IL_4V9F_014

Geometric discrepancy: 0.1698

The information below is about IL_4V9F_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31504.1

Basepair signature

cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

1

Unit IDs

4V4V|1|B0|G|481
4V4V|1|B0|A|482
4V4V|1|B0|A|483
4V4V|1|B0|C|484
4V4V|1|B0|C|485
*
4V4V|1|B0|G|495
4V4V|1|B0|G|496
4V4V|1|B0|A|497
4V4V|1|B0|G|498
4V4V|1|B0|U|499
4V4V|1|B0|G|500
4V4V|1|B0|A|501
4V4V|1|B0|A|502
4V4V|1|B0|A|503
4V4V|1|B0|A|504
4V4V|1|B0|A|505
4V4V|1|B0|G|506
4V4V|1|B0|A|507
4V4V|1|B0|A|508
4V4V|1|B0|C|509

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L22

Chain BS

50S ribosomal protein L24