IL_4V4V_066

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUGAAG*UGGAGGA

Length

13 nucleotides

Bulged bases

4V4V|1|B0|G|729

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_066 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.2643

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V4V|1|B0|U|702
4V4V|1|B0|U|703
4V4V|1|B0|G|704
4V4V|1|B0|A|705
4V4V|1|B0|A|706
4V4V|1|B0|G|707
*
4V4V|1|B0|U|724
4V4V|1|B0|G|725
4V4V|1|B0|G|726
4V4V|1|B0|A|727
4V4V|1|B0|G|728
4V4V|1|B0|G|729
4V4V|1|B0|A|730

Current chains

Chain B0

23S ribosomal RNA

Nearby chains