3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GGGAAAC*GGAAGAUGUACGGGGC
Length
23 nucleotides
Bulged bases
4V4V|1|B0|G|1025, 4V4V|1|B0|A|1127, 4V4V|1|B0|U|1130, 4V4V|1|B0|A|1133
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4V_078 not in the Motif Atlas
Homologous match to IL_7A0S_037
Geometric discrepancy: 0.5307
The information below is about IL_7A0S_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

4V4V|1|B0|G|1024
4V4V|1|B0|G|1025
4V4V|1|B0|G|1026
4V4V|1|B0|A|1027
4V4V|1|B0|A|1028
4V4V|1|B0|A|1029
4V4V|1|B0|C|1030
*
4V4V|1|B0|G|1124
4V4V|1|B0|G|1125
4V4V|1|B0|A|1126
4V4V|1|B0|A|1127
4V4V|1|B0|G|1128
4V4V|1|B0|A|1129
4V4V|1|B0|U|1130
4V4V|1|B0|G|1131
4V4V|1|B0|U|1132
4V4V|1|B0|A|1133
4V4V|1|B0|C|1135
4V4V|1|B0|G|1136
4V4V|1|B0|G|1137
4V4V|1|B0|G|1138
4V4V|1|B0|G|1139
4V4V|1|B0|C|1140

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

Chain B9
5S ribosomal RNA; 5S rRNA
Chain BB
50S ribosomal protein L3
Chain BH
50S ribosomal protein L13
Chain BK
50S ribosomal protein L16

Coloring options:


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