IL_4V4V_084

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUUC*GAAGUG

Length

11 nucleotides

Bulged bases

4V4V|1|B0|G|1248

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_084 not in the Motif Atlas

Geometric match to IL_7VYX_008

Geometric discrepancy: 0.3348

The information below is about IL_7VYX_008

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

4V4V|1|B0|C|1196
4V4V|1|B0|G|1197
4V4V|1|B0|U|1198
4V4V|1|B0|U|1199
4V4V|1|B0|C|1200
*
4V4V|1|B0|G|1245
4V4V|1|B0|A|1246
4V4V|1|B0|A|1247
4V4V|1|B0|G|1248
4V4V|1|B0|U|1249
4V4V|1|B0|G|1250

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15

Chain BO

50S RIBOSOMAL PROTEIN L20