IL_4V4V_097

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_097 not in the Motif Atlas

Geometric match to IL_8C3A_484

Geometric discrepancy: 0.2104

The information below is about IL_8C3A_484

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.2

Basepair signature

cWW-cWW-L-cWW-L-R-L-R-L-L

Number of instances in this motif group

3

Unit IDs

4V4V|1|B0|G|1666
4V4V|1|B0|G|1667
4V4V|1|B0|A|1668
4V4V|1|B0|A|1669
4V4V|1|B0|C|1670
4V4V|1|B0|U|1671
4V4V|1|B0|A|1672
4V4V|1|B0|G|1673
4V4V|1|B0|G|1674
*
4V4V|1|B0|C|1990
4V4V|1|B0|U|1991
4V4V|1|B0|G|1992
4V4V|1|B0|U|1993
4V4V|1|B0|C|1994

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BI

50S ribosomal protein L14