IL_4V4V_098

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4V4V|1|B0|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_098 not in the Motif Atlas

Homologous match to IL_7RQB_068

Geometric discrepancy: 0.1211

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

4V4V|1|B0|C|1686
4V4V|1|B0|G|1687
4V4V|1|B0|U|1688
4V4V|1|B0|A|1689
4V4V|1|B0|A|1690
4V4V|1|B0|C|1691
*
4V4V|1|B0|G|1696
4V4V|1|B0|G|1697
4V4V|1|B0|A|1698
4V4V|1|B0|G|1699
4V4V|1|B0|A|1700
4V4V|1|B0|A|1701
4V4V|1|B0|G|1702

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA