IL_4V4V_101
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GC*GCAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4V_101 not in the Motif Atlas
- Homologous match to IL_4WF9_076
- Geometric discrepancy: 0.4237
- The information below is about IL_4WF9_076
- Detailed Annotation
- Bulged stacked bases
- Broad Annotation
- No text annotation
- Motif group
- IL_22551.4
- Basepair signature
- cWW-L-cWW-L
- Number of instances in this motif group
- 9
Unit IDs
4V4V|1|B0|G|1933
4V4V|1|B0|C|1934
*
4V4V|1|B0|G|1964
4V4V|1|B0|C|1965
4V4V|1|B0|A|1966
4V4V|1|B0|C|1967
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AV
- Transfer RNA; tRNA
Coloring options: