IL_4V4V_114
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CUC*GCGAG
- Length
- 8 nucleotides
- Bulged bases
- 4V4V|1|B0|G|2576, 4V4V|1|B0|A|2577
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4V_114 not in the Motif Atlas
- Geometric match to IL_4V9F_087
- Geometric discrepancy: 0.0698
- The information below is about IL_4V9F_087
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V4V|1|B0|C|2510
4V4V|1|B0|U|2511
4V4V|1|B0|C|2512
*
4V4V|1|B0|G|2574
4V4V|1|B0|C|2575
4V4V|1|B0|G|2576
4V4V|1|B0|A|2577
4V4V|1|B0|G|2578
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain AU
- Transfer RNA; tRNA
- Chain BB
- 50S ribosomal protein L3
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