IL_4V4V_115

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CA*UACG

Length

6 nucleotides

Bulged bases

4V4V|1|B0|A|2572, 4V4V|1|B0|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_115 not in the Motif Atlas

Homologous match to IL_7A0S_090

Geometric discrepancy: 0.3849

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

4V4V|1|B0|C|2512
4V4V|1|B0|A|2513
*
4V4V|1|B0|U|2571
4V4V|1|B0|A|2572
4V4V|1|B0|C|2573
4V4V|1|B0|G|2574

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BB

50S ribosomal protein L3