IL_4V4V_116

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UG*CAAG

Length

6 nucleotides

Bulged bases

4V4V|1|B0|A|2542

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_116 not in the Motif Atlas

Homologous match to IL_7RQB_099

Geometric discrepancy: 0.1335

The information below is about IL_7RQB_099

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.3

Basepair signature

cWW-tSH-cWW

Number of instances in this motif group

10

Unit IDs

4V4V|1|B0|U|2522
4V4V|1|B0|G|2523
*
4V4V|1|B0|C|2540
4V4V|1|B0|A|2541
4V4V|1|B0|A|2542
4V4V|1|B0|G|2543

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L3