IL_4V4V_117

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

4V4V|1|B0|A|2602

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_117 not in the Motif Atlas

Homologous match to IL_5J7L_344

Geometric discrepancy: 0.2427

The information below is about IL_5J7L_344

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V4V|1|B0|C|2591
4V4V|1|B0|G|2592
*
4V4V|1|B0|C|2601
4V4V|1|B0|A|2602
4V4V|1|B0|G|2603

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA