IL_4V4V_124

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGC*GUAC

Length

7 nucleotides

Bulged bases

4V4V|1|B0|A|2879

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_124 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.08

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V4V|1|B0|G|2838
4V4V|1|B0|G|2839
4V4V|1|B0|C|2840
*
4V4V|1|B0|G|2877
4V4V|1|B0|U|2878
4V4V|1|B0|A|2879
4V4V|1|B0|C|2880

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L3

Chain BL

50S ribosomal protein L17