3D structure

PDB id
4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
GUGUAG*CGUAGAGAU
Length
15 nucleotides
Bulged bases
4V4V|1|AA|A|702, 4V4V|1|AA|G|703
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4V_134 not in the Motif Atlas
Homologous match to IL_6CZR_143
Geometric discrepancy: 0.2872
The information below is about IL_6CZR_143
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_37722.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
2

Unit IDs

4V4V|1|AA|G|683
4V4V|1|AA|U|684
4V4V|1|AA|G|685
4V4V|1|AA|U|686
4V4V|1|AA|A|687
4V4V|1|AA|G|688
*
4V4V|1|AA|C|699
4V4V|1|AA|G|700
4V4V|1|AA|U|701
4V4V|1|AA|A|702
4V4V|1|AA|G|703
4V4V|1|AA|A|704
4V4V|1|AA|G|705
4V4V|1|AA|A|706
4V4V|1|AA|U|707

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AK
30S ribosomal subunit protein S11
Chain B0
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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