IL_4V4V_135

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GUUGCCAGC*GGGAACUC

Length

17 nucleotides

Bulged bases

4V4V|1|AA|U|1125, 4V4V|1|AA|C|1129

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|AA|G|1124
4V4V|1|AA|U|1125
4V4V|1|AA|U|1126
4V4V|1|AA|G|1127
4V4V|1|AA|C|1128
4V4V|1|AA|C|1129
4V4V|1|AA|A|1130
4V4V|1|AA|G|1131
4V4V|1|AA|C|1132
*
4V4V|1|AA|G|1142
4V4V|1|AA|G|1143
4V4V|1|AA|G|1144
4V4V|1|AA|A|1145
4V4V|1|AA|A|1146
4V4V|1|AA|C|1147
4V4V|1|AA|U|1148
4V4V|1|AA|C|1149

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal subunit protein S9

Chain AJ

30S ribosomal subunit protein S10