IL_4V4V_144

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUAAGUGGGAAACGAUG*CGCGGAAGAUGUACGGGGCUAAA

Length

40 nucleotides

Bulged bases

4V4V|1|B0|G|1025, 4V4V|1|B0|U|1033, 4V4V|1|B0|A|1127, 4V4V|1|B0|U|1130, 4V4V|1|B0|A|1133

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|U|1018
4V4V|1|B0|U|1019
4V4V|1|B0|A|1020
4V4V|1|B0|A|1021
4V4V|1|B0|G|1022
4V4V|1|B0|U|1023
4V4V|1|B0|G|1024
4V4V|1|B0|G|1025
4V4V|1|B0|G|1026
4V4V|1|B0|A|1027
4V4V|1|B0|A|1028
4V4V|1|B0|A|1029
4V4V|1|B0|C|1030
4V4V|1|B0|G|1031
4V4V|1|B0|A|1032
4V4V|1|B0|U|1033
4V4V|1|B0|G|1034
*
4V4V|1|B0|C|1121
4V4V|1|B0|G|1122
4V4V|1|B0|C|1123
4V4V|1|B0|G|1124
4V4V|1|B0|G|1125
4V4V|1|B0|A|1126
4V4V|1|B0|A|1127
4V4V|1|B0|G|1128
4V4V|1|B0|A|1129
4V4V|1|B0|U|1130
4V4V|1|B0|G|1131
4V4V|1|B0|U|1132
4V4V|1|B0|A|1133
4V4V|1|B0|C|1135
4V4V|1|B0|G|1136
4V4V|1|B0|G|1137
4V4V|1|B0|G|1138
4V4V|1|B0|G|1139
4V4V|1|B0|C|1140
4V4V|1|B0|U|1141
4V4V|1|B0|A|1142
4V4V|1|B0|A|1143
4V4V|1|B0|A|1144

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain B9

5S ribosomal RNA; 5S rRNA

Chain BB

50S ribosomal protein L3

Chain BH

50S ribosomal protein L13

Chain BK

50S ribosomal protein L16