Loop IL_4V4V

General information

3D structure

PDB id: 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
Description: Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
Experimental method: ELECTRON MICROSCOPY
Resolution: 15 Å

Loop

Sequence: UGGGUGAUGGAGGGACG*CCAGGAAAAGCUUCUAAACGUUGAAA
Length: 43 nucleotides
Bulged bases: 4V4V|1|B0|G|1421, 4V4V|1|B0|A|1427, 4V4V|1|B0|C|1428, 4V4V|1|B0|A|1566, 4V4V|1|B0|U|1584, 4V4V|1|B0|U|1585
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V4V|1|B0|U|1413
4V4V|1|B0|G|1414
4V4V|1|B0|G|1415
4V4V|1|B0|G|1416
4V4V|1|B0|U|1417
4V4V|1|B0|G|1418
4V4V|1|B0|A|1419
4V4V|1|B0|U|1420
4V4V|1|B0|G|1421
4V4V|1|B0|G|1422
4V4V|1|B0|A|1423
4V4V|1|B0|G|1424
4V4V|1|B0|G|1425
4V4V|1|B0|G|1426
4V4V|1|B0|A|1427
4V4V|1|B0|C|1428
4V4V|1|B0|G|1429
*
4V4V|1|B0|C|1564
4V4V|1|B0|C|1565
4V4V|1|B0|A|1566
4V4V|1|B0|G|1567
4V4V|1|B0|G|1568
4V4V|1|B0|A|1569
4V4V|1|B0|A|1570
4V4V|1|B0|A|1571
4V4V|1|B0|A|1572
4V4V|1|B0|G|1573
4V4V|1|B0|C|1574
4V4V|1|B0|U|1575
4V4V|1|B0|U|1576
4V4V|1|B0|C|1577
4V4V|1|B0|U|1578
4V4V|1|B0|A|1579
4V4V|1|B0|A|1580
4V4V|1|B0|A|1581
4V4V|1|B0|C|1582
4V4V|1|B0|G|1583
4V4V|1|B0|U|1584
4V4V|1|B0|U|1585
4V4V|1|B0|G|1586
4V4V|1|B0|A|1587
4V4V|1|B0|A|1588
4V4V|1|B0|A|1589

Current chains

Chain B0: 23S ribosomal RNA

Nearby chains

Chain BA: 50S ribosomal protein L2

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Coloring options:
Nucleotide numbers

IL_4V4V_148