IL_4V4V_149

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

AAG*CCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_149 not in the Motif Atlas

Homologous match to IL_7A0S_052

Geometric discrepancy: 0.5391

The information below is about IL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14688.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V4V|1|B0|A|1433
4V4V|1|B0|A|1434
4V4V|1|B0|G|1435
*
4V4V|1|B0|C|1557
4V4V|1|B0|C|1558
4V4V|1|B0|U|1559

Current chains

Chain B0

23S ribosomal RNA

Nearby chains