IL_4V4V_153

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCGCGGCAAG*CUGCCGUGG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4V|1|B0|C|2044
4V4V|1|B0|C|2045
4V4V|1|B0|G|2046
4V4V|1|B0|C|2047
4V4V|1|B0|G|2048
4V4V|1|B0|G|2049
4V4V|1|B0|C|2050
4V4V|1|B0|A|2051
4V4V|1|B0|A|2052
4V4V|1|B0|G|2053
*
4V4V|1|B0|C|2616
4V4V|1|B0|U|2617
4V4V|1|B0|G|2618
4V4V|1|B0|C|2619
4V4V|1|B0|C|2620
4V4V|1|B0|G|2621
4V4V|1|B0|U|2622
4V4V|1|B0|G|2623
4V4V|1|B0|G|2624

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BB

50S ribosomal protein L3