IL_4V4V_154

3D structure

PDB id

4V4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4V4V|1|B0|U|2689

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4V_154 not in the Motif Atlas

Geometric match to IL_4V9F_094

Geometric discrepancy: 0.3422

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

4V4V|1|B0|U|2687
4V4V|1|B0|G|2688
4V4V|1|B0|U|2689
4V4V|1|B0|U|2690
4V4V|1|B0|C|2691
*
4V4V|1|B0|G|2718
4V4V|1|B0|G|2719
4V4V|1|B0|U|2720
4V4V|1|B0|A|2721
4V4V|1|B0|G|2722

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19