IL_4V4V_162
3D structure
- PDB id
- 4V4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a pre-translocational E. coli ribosome obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1056
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CC*GAAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4V_162 not in the Motif Atlas
- Homologous match to IL_4WF9_126
- Geometric discrepancy: 0.2495
- The information below is about IL_4WF9_126
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.4
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
4V4V|1|B9|C|30
4V4V|1|B9|C|31
*
4V4V|1|B9|G|51
4V4V|1|B9|A|52
4V4V|1|B9|A|53
4V4V|1|B9|G|54
Current chains
- Chain B9
- 5S ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein L5
- Chain BM
- 50S ribosomal protein L18
Coloring options: