IL_4V4W_017

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

ACGCAG*UCAGGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_017 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.254

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V4W|1|AA|A|579
4V4W|1|AA|C|580
4V4W|1|AA|G|581
4V4W|1|AA|C|582
4V4W|1|AA|A|583
4V4W|1|AA|G|584
*
4V4W|1|AA|U|757
4V4W|1|AA|C|758
4V4W|1|AA|A|759
4V4W|1|AA|G|760
4V4W|1|AA|G|761
4V4W|1|AA|U|762

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal subunit protein S15

Chain AQ

30S ribosomal subunit protein S17

Chain B0

Large subunit ribosomal RNA; LSU rRNA