IL_4V4W_023
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- GGUGUAG*CGUAGAGAUC
- Length
- 17 nucleotides
- Bulged bases
- 4V4W|1|AA|A|702
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_023 not in the Motif Atlas
- Geometric match to IL_4V88_508
- Geometric discrepancy: 0.3401
- The information below is about IL_4V88_508
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_99095.1
- Basepair signature
- cWW-tSS-L-tSH-L-R-R-R-L-cWW-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V4W|1|AA|G|682
4V4W|1|AA|G|683
4V4W|1|AA|U|684
4V4W|1|AA|G|685
4V4W|1|AA|U|686
4V4W|1|AA|A|687
4V4W|1|AA|G|688
*
4V4W|1|AA|C|699
4V4W|1|AA|G|700
4V4W|1|AA|U|701
4V4W|1|AA|A|702
4V4W|1|AA|G|703
4V4W|1|AA|A|704
4V4W|1|AA|G|705
4V4W|1|AA|A|706
4V4W|1|AA|U|707
4V4W|1|AA|C|708
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AK
- 30S ribosomal subunit protein S11
- Chain B0
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- 50S ribosomal protein L2
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