IL_4V4W_035
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- UG*CAA
- Length
- 5 nucleotides
- Bulged bases
- 4V4W|1|AA|A|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_035 not in the Motif Atlas
- Geometric match to IL_5J7L_049
- Geometric discrepancy: 0.3587
- The information below is about IL_5J7L_049
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.6
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 130
Unit IDs
4V4W|1|AA|U|1060
4V4W|1|AA|G|1061
*
4V4W|1|AA|C|1195
4V4W|1|AA|A|1196
4V4W|1|AA|A|1197
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal subunit protein S3
- Chain AE
- 30S ribosomal subunit protein S5
- Chain AJ
- 30S ribosomal subunit protein S10
- Chain AU
- Transfer RNA; tRNA
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