IL_4V4W_049

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GC*GCGAAAAGAACCCCGGCGAGGGGAGUGAAAAAGAACC

Length

39 nucleotides

Bulged bases

4V4W|1|B0|G|491, 4V4W|1|B0|A|504, 4V4W|1|B0|A|508

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|30
4V4W|1|B0|C|31
*
4V4W|1|B0|G|474
4V4W|1|B0|C|475
4V4W|1|B0|G|476
4V4W|1|B0|A|477
4V4W|1|B0|A|478
4V4W|1|B0|A|479
4V4W|1|B0|A|480
4V4W|1|B0|G|481
4V4W|1|B0|A|482
4V4W|1|B0|A|483
4V4W|1|B0|C|484
4V4W|1|B0|C|485
4V4W|1|B0|C|486
4V4W|1|B0|C|487
4V4W|1|B0|G|488
4V4W|1|B0|G|489
4V4W|1|B0|C|490
4V4W|1|B0|G|491
4V4W|1|B0|A|492
4V4W|1|B0|G|493
4V4W|1|B0|G|494
4V4W|1|B0|G|495
4V4W|1|B0|G|496
4V4W|1|B0|A|497
4V4W|1|B0|G|498
4V4W|1|B0|U|499
4V4W|1|B0|G|500
4V4W|1|B0|A|501
4V4W|1|B0|A|502
4V4W|1|B0|A|503
4V4W|1|B0|A|504
4V4W|1|B0|A|505
4V4W|1|B0|G|506
4V4W|1|B0|A|507
4V4W|1|B0|A|508
4V4W|1|B0|C|509
4V4W|1|B0|C|510

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L20

Chain BQ

50S ribosomal protein L22

Chain BS

50S ribosomal protein L24