IL_4V4W_050

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

4V4W|1|B0|A|443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_050 not in the Motif Atlas

Homologous match to IL_4WF9_002

Geometric discrepancy: 0.3207

The information below is about IL_4WF9_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

4V4W|1|B0|G|36
4V4W|1|B0|C|37
*
4V4W|1|B0|G|442
4V4W|1|B0|A|443
4V4W|1|B0|C|444

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15