IL_4V4W_058
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- CCG*CUG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_058 not in the Motif Atlas
- Geometric match to IL_4V9F_105
- Geometric discrepancy: 0.137
- The information below is about IL_4V9F_105
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 174
Unit IDs
4V4W|1|B0|C|672
4V4W|1|B0|C|673
4V4W|1|B0|G|674
*
4V4W|1|B0|C|806
4V4W|1|B0|U|807
4V4W|1|B0|G|808
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain BC
- 50S ribosomal protein L4
- Chain BJ
- 50S ribosomal protein L15
Coloring options: