IL_4V4W_059

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GAAACC*GGAGAUAGC

Length

15 nucleotides

Bulged bases

4V4W|1|B0|G|801, 4V4W|1|B0|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|B0|G|674
4V4W|1|B0|A|675
4V4W|1|B0|A|676
4V4W|1|B0|A|677
4V4W|1|B0|C|678
4V4W|1|B0|C|679
*
4V4W|1|B0|G|798
4V4W|1|B0|G|799
4V4W|1|B0|A|800
4V4W|1|B0|G|801
4V4W|1|B0|A|802
4V4W|1|B0|U|803
4V4W|1|B0|A|804
4V4W|1|B0|G|805
4V4W|1|B0|C|806

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L4

Chain BJ

50S ribosomal protein L15