IL_4V4W_063

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCUAAG*CGAAGC

Length

12 nucleotides

Bulged bases

4V4W|1|B0|A|1156

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_063 not in the Motif Atlas

Geometric match to IL_7RQB_107

Geometric discrepancy: 0.2797

The information below is about IL_7RQB_107

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.5

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V4W|1|B0|G|997
4V4W|1|B0|C|998
4V4W|1|B0|U|999
4V4W|1|B0|A|1000
4V4W|1|B0|A|1001
4V4W|1|B0|G|1002
*
4V4W|1|B0|C|1153
4V4W|1|B0|G|1154
4V4W|1|B0|A|1155
4V4W|1|B0|A|1156
4V4W|1|B0|G|1157
4V4W|1|B0|C|1158

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L20

Chain BX

50S ribosomal protein L30