3D structure

PDB id
4V4W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
AAG*CU
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V4W_081 not in the Motif Atlas
Geometric match to IL_7RQB_058
Geometric discrepancy: 0.2527
The information below is about IL_7RQB_058
Detailed Annotation
Single stack bend
Broad Annotation
Single stack bend
Motif group
IL_76488.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
36

Unit IDs

4V4W|1|B0|A|1449
4V4W|1|B0|A|1450
4V4W|1|B0|G|1451
*
4V4W|1|B0|C|1461
4V4W|1|B0|U|1462

Current chains

Chain B0
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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