IL_4V4W_086
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- ACUAGG*CUGU
- Length
- 10 nucleotides
- Bulged bases
- 4V4W|1|B0|G|1992
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_086 not in the Motif Atlas
- Homologous match to IL_5J7L_307
- Geometric discrepancy: 0.2165
- The information below is about IL_5J7L_307
- Detailed Annotation
- Intercalated tWH
- Broad Annotation
- Intercalated tWH
- Motif group
- IL_76758.2
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 7
Unit IDs
4V4W|1|B0|A|1669
4V4W|1|B0|C|1670
4V4W|1|B0|U|1671
4V4W|1|B0|A|1672
4V4W|1|B0|G|1673
4V4W|1|B0|G|1674
*
4V4W|1|B0|C|1990
4V4W|1|B0|U|1991
4V4W|1|B0|G|1992
4V4W|1|B0|U|1993
Current chains
- Chain B0
- 23S ribosomal RNA
Nearby chains
- Chain AU
- Transfer RNA; tRNA
- Chain BB
- 50S ribosomal protein L3
- Chain BI
- 50S ribosomal protein L14
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