IL_4V4W_104

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

4V4W|1|B0|U|2689

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_104 not in the Motif Atlas

Geometric match to IL_4V9F_094

Geometric discrepancy: 0.3157

The information below is about IL_4V9F_094

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_45790.2

Basepair signature

cWW-tSH-L-tHS-cWW

Number of instances in this motif group

12

Unit IDs

4V4W|1|B0|U|2687
4V4W|1|B0|G|2688
4V4W|1|B0|U|2689
4V4W|1|B0|U|2690
4V4W|1|B0|C|2691
*
4V4W|1|B0|G|2718
4V4W|1|B0|G|2719
4V4W|1|B0|U|2720
4V4W|1|B0|A|2721
4V4W|1|B0|G|2722

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BL

50S ribosomal protein L17

Chain BN

50S ribosomal protein L19