IL_4V4W_111

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CCU*AGAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_111 not in the Motif Atlas

Geometric match to IL_6DME_002

Geometric discrepancy: 0.2902

The information below is about IL_6DME_002

Detailed Annotation

8-nt loop receptor

Broad Annotation

Loop-receptor motif

Motif group

IL_44025.1

Basepair signature

cWW-cWW-tHS-cSH-cSH-cWW

Number of instances in this motif group

3

Unit IDs

4V4W|1|B9|C|30
4V4W|1|B9|C|31
4V4W|1|B9|U|32
*
4V4W|1|B9|A|50
4V4W|1|B9|G|51
4V4W|1|B9|A|52
4V4W|1|B9|A|53
4V4W|1|B9|G|54

Current chains

Chain B9

5S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L5

Chain BM

50S ribosomal protein L18