IL_4V4W_118

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAGGAAGGGA*UCAUUGACGUUAC

Length

24 nucleotides

Bulged bases

4V4W|1|AA|C|483, 4V4W|1|AA|G|484

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V4W|1|AA|G|446
4V4W|1|AA|G|447
4V4W|1|AA|A|448
4V4W|1|AA|G|449
4V4W|1|AA|G|450
4V4W|1|AA|A|451
4V4W|1|AA|A|452
4V4W|1|AA|G|453
4V4W|1|AA|G|454
4V4W|1|AA|G|455
4V4W|1|AA|A|456
*
4V4W|1|AA|U|476
4V4W|1|AA|C|477
4V4W|1|AA|A|478
4V4W|1|AA|U|479
4V4W|1|AA|U|480
4V4W|1|AA|G|481
4V4W|1|AA|A|482
4V4W|1|AA|C|483
4V4W|1|AA|G|484
4V4W|1|AA|U|485
4V4W|1|AA|U|486
4V4W|1|AA|A|487
4V4W|1|AA|C|488

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal subunit protein S16