IL_4V4W_120

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

UUAA*UGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_120 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.233

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

4V4W|1|AA|U|593
4V4W|1|AA|U|594
4V4W|1|AA|A|595
4V4W|1|AA|A|596
*
4V4W|1|AA|U|644
4V4W|1|AA|G|645
4V4W|1|AA|G|646

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal subunit protein S8

Chain AQ

30S ribosomal subunit protein S17