IL_4V4W_126
3D structure
- PDB id
- 4V4W (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 15 Å
Loop
- Sequence
- UGUC*GUCAA
- Length
- 9 nucleotides
- Bulged bases
- 4V4W|1|AA|A|1196
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V4W_126 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2662
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
4V4W|1|AA|U|1060
4V4W|1|AA|G|1061
4V4W|1|AA|U|1062
4V4W|1|AA|C|1063
*
4V4W|1|AA|G|1193
4V4W|1|AA|U|1194
4V4W|1|AA|C|1195
4V4W|1|AA|A|1196
4V4W|1|AA|A|1197
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AC
- 30S ribosomal subunit protein S3
- Chain AE
- 30S ribosomal subunit protein S5
- Chain AI
- 30S ribosomal subunit protein S9
- Chain AJ
- 30S ribosomal subunit protein S10
- Chain AU
- Transfer RNA; tRNA
Coloring options: