IL_4V4W_130

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GGAGU*AUGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_130 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3978

The information below is about IL_7A0S_056

Detailed Annotation

Double sheared with near cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

4V4W|1|AA|G|1416
4V4W|1|AA|G|1417
4V4W|1|AA|A|1418
4V4W|1|AA|G|1419
4V4W|1|AA|U|1420
*
4V4W|1|AA|A|1480
4V4W|1|AA|U|1481
4V4W|1|AA|G|1482
4V4W|1|AA|A|1483
4V4W|1|AA|C|1484

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain B0

Large subunit ribosomal RNA; LSU rRNA

Chain BI

50S ribosomal protein L14