IL_4V4W_133

3D structure

PDB id

4V4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a SecM-stalled E. coli ribosome complex obtained by fitting atomic models for RNA and protein components into cryo-EM map EMD-1143

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GCA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V4W_133 not in the Motif Atlas

Geometric match to IL_1Z7F_005

Geometric discrepancy: 0.1911

The information below is about IL_1Z7F_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V4W|1|B0|G|993
4V4W|1|B0|C|994
4V4W|1|B0|A|996
*
4V4W|1|B0|U|1159
4V4W|1|B0|G|1160
4V4W|1|B0|C|1161

Current chains

Chain B0

23S ribosomal RNA

Nearby chains

Chain BO

50S ribosomal protein L20

Chain BX

50S ribosomal protein L30